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19
th
Annual International Conference
on Research in Computational
Molecular Biology
Book of Abstracts
Warsaw, Poland
April 12 – 15, 2015
1
Program at a glance
April 11-15, 2015
Saturday, April 11
18:00-21:00
Welcome reception
Opening remarks
KEYNOTE:
Michael Levitt
Session 1
Coffee break
Session 2 (structure, part 1)
Lunch
KEYNOTE:
Bonnie Berger
Session 3 (alignment free methods)
Coffee break
Session 4 (sequence analysis)
Poster session sponsored by University of Pittsburgh
Social dinner at the new Library of the University of Warsaw
KEYNOTE:
M. Madan Babu
Session 5 (chromatin structure)
Coffee break
Session 6 (population)
Lunch
Session 7
KEYNOTE:
Wacław Szybalski
Free time / Sightseeing
KEYNOTE:
Bas van Steensel
Session 8 (gene regulation)
Coffee break
Session 9 (cancer)
Lunch
Session 10 (structure, part 2)
Coffee break
Session 11 (networks)
Business Meeting
Poster session sponsored by National Science Foundation
KEYNOTE:
Magda Konarska
Session 12 (splicing)
Coffee break
Session 13 (evolutionary trees)
Lunch
Session 14 (association analysis)
Award ceremony and closing remarks
Sunday, April 12
08:45-9:00
09:00-10:00
10:00-10:40
10:40-11:10
11:10-12:30
12:30-13:30
13:30-14:30
14:30-15:10
15:10-15:40
15:40-17:00
17:30-19:00
20:30-22:00
Monday, April 13
09:00-10:00
10:00-10:40
10:40-11:10
11:10-12:30
12:30-13:30
13:30-14:10
14:10-15:30
15:30-19:00
Tuesday, April 14
09:00-10:00
10:00-10:40
10:40-11:10
11:10-12:30
12:30-13:30
13:30-14:50
14:50-15:20
15:20-16:40
16:50-17:20
17:30-19:00
Wednesday, April 15
09:00-10:00
10:00-10:40
10:40-11:10
11:10-12:30
12:30-13:30
13:30-14:50
14:30-15:00
Warsaw, Poland, April 12-15, 2015
2
Organization
Preface
2015 is already the nineteenth edition of the RECOMB conference, so it has become natural to
have high expectations on all aspects of the meeting. Even though this is the first time RECOMB
is held in Poland, we hope we will not disappoint our participants this year. As the organizers, we
have been lucky to work with Teresa Przytycka as the Program Committee Chair, who has been
working with us very tightly on the program as well as organizational matters. Mona Singh and
Lenore Cowen, who were responsible for the highlight and poster submissions, were also helpful
in timely completion of program of the conference. Putting this conference together would not
be possible without the members of the organizing committee as well as the helpful staff of the
GlobalWings company who helped us with the logistics and their experience. The same goes for
the students from our volunteer team helping during the conference itself. Last, but not least, this
conference would not be possible without our sponsors, who have been very generous in supporting
RECOMB through direct donations and travel fellowships for 94 students and post-docs. We are
looking forward to the conference itself and thank you all for your participation.
Jerzy Tiuryn and Bartek Wilczyński
Conference Chairs
Steering committee
Vineet Bafna
Serafim Batzoglou
Bonnie Berger
Sorin Istrail
Michal Linial
Martin Vingron (Chair)
University of California, San Diego, USA
Stanford University, USA
Massachusetts Institute of Technology, USA
Brown University, USA
The Hebrew University of Jerusalem, Israel
Max Planck Institute for Molecular Genetics, Ger-
many
RECOMB 2015
Organization
3
Previous RECOMB meetings
January 20-23, 1997
March 22-25, 1998
April 22-25, 1999
April 8-11, 2000
April 22-25, 2001
April 18-21, 2002
April 10-13, 2003
March 27-31, 2004
May 14-18, 2005
April 2-5, 2006
April 21-25, 2007
March 30-April 2, 2008
May 18-21, 2009
August 12-15, 2010
March 28-31, 2011
April 21-24, 2012
April 7-10, 2013
April 2-5, 2014
April 12-15, 2015
Santa Fe, USA
New York, USA
Lyon, France
Tokyo, Japan
Montréal, Canada
Washington, USA
Berlin, Germany
San Diego, USA
Boston, USA
Venice, Italy
San Francisco, USA
Singapore
Tucson, USA
Lisbon, Portugal
Vancouver, Canada
Barcelona, Spain
Beijing, China
Pittsburgh, USA
Warsaw, Poland
Organizing committee
Paweł Bednarz
Agata Charzyńska
Norbert Dojer
Anna Gambin
Ilona Grabowicz
Paweł Górecki
Julia Herman-Iżycka
Aleksander Jankowski
Agnieszka Mykowiecka
Ewa Szczurek
Jerzy Tiuryn (Co-chair)
Irina Tuszyńska
Bartek Wilczyński (Co-chair)
Damian Wójtowicz
Rafał Zaborowski
University of Warsaw, Poland
Polish Academy of Sciences, Poland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
ETH Zurich, Switzerland
University of Warsaw, Poland
University of Warsaw, Poland
University of Warsaw, Poland
National Institutes of Health, USA
University of Warsaw, Poland
Student volunteers
Konrad Bednarek
Katarzyna Bednarska
Karolina Dawid
Michał Gąsior
Agnieszka Hajduk
Paweł Jankowski
Katarzyna Kędzierska
Anna Kilian
Marcin Kostecki
Hanna Kranas
Michał Krassowski
Karolina Kuczkowska
Jagoda Kuśnierz
Mateusz Legięcki
Warsaw, Poland, April 12-15, 2015
Karolina Sienkiewicz
Grzegorz Skoraczyński
Maryna Wiśniewska
Katarzyna Życieńska
4
Organization
Program committee
Tatsuya Akutsu
Kyoto University, Japan
Peter Arndt
Max Planck Institute for Molecular Genetics, Germany
Rolf Backofen
University of Freiburg, Germany
Joel Bader
Johns Hopkins University, USA
Vineet Bafna
University of California, San Diego, USA
Nuno Bandeira
University of California, San Diego, USA
Ziv Bar-Joseph
Carnegie Mellon University, USA
Serafim Batzoglou
Stanford University, USA
Jan Baumbach
University of Southern Denmark, Denmark
Niko Beerenwinkel
ETH Zurich, Switzerland
Panayiotis Takis Benos
University of Pittsburgh, USA
Bonnie Berger
Massachusetts Institute of Technology, USA
Jadwiga Bienkowska
Biogen Idec, USA
Mathieu Blanchette
McGill University, Canada
Jacek Błażewicz Poznań
University of Technology, Poland
Michael R. Brent
Washington University, St. Louis, USA
Chakra Chennubhotla
University of Pittsburgh, USA
Lenore J. Cowen (Posters Chair)
Tufts University, USA
Colin Dewey
University ofWisconsin-Madison, USA
Dannie Durand
Carnegie Mellon University, USA
Nadia El-Mabrouk
Université de Montréal, Canada
Julien Gagneur
Ludwig-Maximilians-Universität München, Germany
Anna Gambin
University of Warsaw, Poland
Irit Gat-Viks
Tel Aviv University, Israel
Mikhail Gelfand
Russian Academy of Sciences, Russia
David Gifford
Massachusetts Institute of Technology, USA
Anna Goldenberg
University of Toronto, Canada
Eran Halperin
International Computer Science Institute, USA
Alexander Hartemink
Duke University, USA
Michael Hoffman
University of Toronto, Canada
Trey Ideker
University of California, San Diego, USA
Sorin Istrail
Brown University, USA
Tao Jiang
University of California, Riverside, USA
Igor Jurisica
Ontario Cancer Institute, Canada
Tamer Kahveci
University of Florida, USA
Simon Kasif
Boston University, USA
Carl Kingsford
Carnegie Mellon University, USA
Mehmet Koyuturk
Case Western Reserve University, USA
Rui Kuang
University of Minnesota Twin Cities, USA
Jens Lagergren
KTH Royal Institute of Technology, Sweden
Thomas Lengauer
Max Planck Institute for Informatics, Germany
Christina Leslie
Memorial Sloan Kettering Cancer Center, USA
Michal Linial
The Hebrew University of Jerusalem, Israel
Stefano Lonardi
University of California, Riverside, USA
Paul Medvedev
Pennsylvania State University, USA
Tijana Milenkovic
University of Notre Dame, USA
Satoru Miyano
University of Tokyo, Japan
Bernard Moret
École Polytechnique Fédérale de Lausanne, Switzerland
RECOMB 2015

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